PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 912253
Common NameARALYDRAFT_912253
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 163aa    MW: 18368.8 Da    PI: 10.7132
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
912253genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.52.6e-214594355
     AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            ykGVr+++ +g+++AeIrdp++ng  +r++lg++ t+eeAa a+++a+ k++g
  912253 45 YKGVRRRP-WGKYAAEIRDPNKNG--ARIWLGTYETPEEAAVAYDQAAFKMRG 94
            9*******.***********8887..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.96E-3043104No hitNo description
SuperFamilySSF541714.18E-2444103IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.9E-3344103IPR001471AP2/ERF domain
PROSITE profilePS5103224.05244102IPR001471AP2/ERF domain
SMARTSM003804.7E-3844108IPR001471AP2/ERF domain
PfamPF008474.1E-154494IPR001471AP2/ERF domain
PRINTSPR003672.6E-134556IPR001471AP2/ERF domain
PRINTSPR003672.6E-1384104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MEGELRRDNG SAVLDWIRRQ LLEEDDFDLL TAQDSSSPPR RSANYKGVRR RPWGKYAAEI  60
RDPNKNGARI WLGTYETPEE AAVAYDQAAF KMRGSKAKLN FPHLIGIDQA EPVRVTNGNK  120
RQRSMEPNSQ AAKRRSIINL TATTLPSLGL KLSVLQKHLQ RL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2944102260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-2944102563ATERF1
3gcc_A3e-2944102563ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872976.11e-117hypothetical protein ARALYDRAFT_912253
SwissprotQ8L9K11e-42ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLD7M6C01e-117D7M6C0_ARALL; Putative uncharacterized protein
STRINGscaffold_604310.11e-116(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.18e-44ethylene-responsive element binding factor 13